rs39760959 SNP Detail

Summary

• ID
  rs39760959
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47775059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCTCCC AGGGATCTGA
  AGATGGGTAC CAGTGGATGT TGAGCATCCA AGGGTAGCAG GCAAGCCACT AGGCTGGTAT
  GTGCAGCAGG AGGTGTCATA GAATGGTAGG AGTTTGAAGA GAGAGGAAGG AACATGACAG
  AAACATAGTT TAATTGTTTT GTGCAATTTT ACTTAGTGCC AAGGTGTAAG GTTTCACAGG
  W
  AATGATCTAC CTGTTAGCTC CTGGCATCTA TGGAAAAGAT CTTATGCTAG ATATTTTTTA
  AGGCACTAAA CCAAGACTAT GTCACCTGCT TATTTATCTG ACAAAGAATG ATGTGTGTAA
  CATAGAGGCC ACTCGGTTGT ATTCCCGATG GCGTAACAGC AATGTCAACG ACTCTAACTG
  AACACGATGG TGATGCTACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50857486	NES13520338	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39760959					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50857486	NES13520338	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47775059 () rs orientation: forward

Symbol	Name	Function Class
Cfap43	cilia and flagella associated protein 43	within coordinates
Cpgi11037	CpG island 11037	135 bp proximal
D19Dcr56	DNA Segment, Chr 19, Derry C. Roopenian 56	1921 bp proximal
Tssr159755	transcription start site region 159755	487 bp downstream