rs39761106 SNP Detail

Summary

• ID
  rs39761106
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123601139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAACCTA TAAGCCATCC
  CCAAATAAAT GTTTTCTTTT ATGAGCTGCC ATTGTTATTA TGTCTCTTCA CAGCAACAGT
  ATACTGGCTA AGGCATAGTT TTACTAATTT TTACTTTAGT AAGTAATATT AGACTTTCAT
  TAATTGAGTC ATAAAATTTT GCTATATAAG TAATGTCAGT GGTAAAATTC AACTTTTCCT
  R
  TTGGCCATTT ATCTTTGGTT TATATGATAT TTTTGAGAAA ATATAAAATA TTTATGCATC
  TAAACTATCT TTTAAGTATG AATTTTTTAT ACAAAGTAAA AAAATGACTC ATTTTAATAC
  TTTTAGAATA GTCTTATATT TAAATTCTTG ATATATTTGT TTTCTTTTGT GTTGGGGAAA
  AGTTAGAAAT AAATGATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51028524	NES13904371	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39761106					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51028524	NES13904371	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123601139 () rs orientation: forward

Symbol	Name	Function Class
Rr584566	regulatory region 584566	1222 bp distal