rs39763710 SNP Detail

Summary

• ID
  rs39763710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143946926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTGCTT AGGTGAAGCT
  GGCAACACAA CTAGACTCTA GTCACAGCCT CGGTTTTGGA GTCTACTGGC CAGGGTTTCA
  TGAACTCCGA TTAATTAATA AGTGGGACAT GGAGACGTAA AACTTGTCAG CAGAGGGGCA
  GGGGACAAGC CAGGATTTGG AGACTAGACA GGAGCTTCCC ACAGCAGTGT CCTTGCTGAA
  Y
  GCTAACCTTC CGCACTTTCC TCATGAAGAA TGGGGAAACC TTTTCAATAA AAACACAGGA
  AGGGAAGGGT CATTGTTAAA ACCACCAATG AGATGGTCCA TGTGCCACAC AGGTGTCTCT
  TCCAGAGGTG ACACACAGTC TTCAGGCCAC CTCAGTGGCT CAGCCCATCT CATCTGGAAA
  CACAAGCCCA GTCCTGGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51654950	NES14643022	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39763710					SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51654950	NES14643022	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143946926 () rs orientation: forward

Symbol	Name	Function Class
Rr398097	regulatory region 398097	941 bp upstream
Rr586608	regulatory region 586608	789 bp proximal
Rr586609	regulatory region 586609	796 bp proximal
Rr586610	regulatory region 586610	1057 bp proximal