rs39789845 SNP Detail

Summary

• ID
  rs39789845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:87406691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACGATCC TCCCAGAACT
  CCAAAAGTGC TGGAAAATAT CTATTAATGA AAACCCACAG AATACCCATC ATTCTGATAT
  CACAACAGGT TCTTGATGTC ATTTTAACCT GGACACCATA TATCAAAAAA ACGTAAATGT
  TGATCTTCCA TCTTCTCTAC CATCTTCTAG ACAGGACTCG ATCTCTATCT GGTGTTGATA
  R
  GAATTAGTCA ACTATTTTTT AGATCAAAAA CAATTAAAAA AAATAGAAAT TTGGGCTTTT
  TAGTGTGTTC GAACTCTGGG CGAGTTTTCA TTTCTGATTT CATTTGATCA GTGTCCTGAT
  AGAACAGAAC TGTATTTGGG AGATTCTTCT CATAGTGTGT TGTGTTTAAT GAGCCATGTT
  CCCATATTCA TATAATCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51740626	NES14797042	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs39789845					SNP	A	A	A	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51740626	NES14797042	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:87406691 () rs orientation: forward

Symbol	Name	Function Class
Bmp10	bone morphogenetic protein 10	Intron
Gm66434	predicted gene, 66434	within coordinates
Tssr57543	transcription start site region 57543	709 bp downstream
Tssr57544	transcription start site region 57544	622 bp downstream