rs39791397 SNP Detail

Summary

• ID
  rs39791397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19277432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTATCTTG TTAATAAGTT
  TGTGCCTGGG GAATTTTAAT TTCCAAATCT ATAACGTCTA TCTTTCAAAT TATCAAGTAG
  AGGATGACTT AGTGAAAGAG TGTGGAATCC ACTTTAAGTC CTTCCACACA ACGACATTAA
  GAGGAACGAT TTCCTGTCTC CCAACCATCT CTGGTGGCGA AAGGGAGACA TATCTGCTGA
  Y
  GCTGGAAGAC TAGCCTTGTT CTGTGTAGTT TAAGAATATT TTCTTTTTAG TAGAGGGAAG
  AGGGGAAGGA AAGAAGAAGG AAGGGGGAAG GAAGGAAAGA CTAGAAGGAG AAGATCTAAA
  GAGAAAGAAG GAAAGAAGGG AGGGAGGGAG GGAGAAGGGA AGGAGGGGTT AGAAGAAGGA
  GGAAAAGAAA AGGAAGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50916994	NES13479924	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39791397					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50916994	NES13479924	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19277432 () rs orientation: forward

Symbol	Name	Function Class
Rr408233	regulatory region 408233	1053 bp distal
Rr408234	regulatory region 408234	1434 bp distal
Rr408235	regulatory region 408235	684 bp distal
Rr408236	regulatory region 408236	814 bp distal
Rr408237	regulatory region 408237	300 bp proximal
Rr408238	regulatory region 408238	1545 bp proximal
Rr408239	regulatory region 408239	1763 bp proximal
Tfap2b	transcription factor AP-2 beta	1706 bp upstream
Tssr6030	transcription start site region 6030	1732 bp upstream
Tssr6031	transcription start site region 6031	1775 bp upstream
Tssr6032	transcription start site region 6032	1790 bp upstream
Tssr6033	transcription start site region 6033	1806 bp upstream
Tssr6034	transcription start site region 6034	1830 bp upstream
Tssr6035	transcription start site region 6035	1862 bp upstream
Tssr6036	transcription start site region 6036	1886 bp upstream
Tssr6037	transcription start site region 6037	1904 bp upstream
Tssr6038	transcription start site region 6038	1932 bp upstream
Tssr6039	transcription start site region 6039	1947 bp upstream