rs39792661 SNP Detail

Summary

• ID
  rs39792661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:98980868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAGGGGA GCAGAGACGG
  GCTAGCTTAT TTCTAGGCAC AAAGGAGGCC TCAAAACAAA TCTGCTCAAC CTTAGTCTCC
  TGACAACGGG ACCCACAGAA ATGAGTAATT TTTGTGCTTA AGTCTTAAAT GATGACAAAT
  AGCTTTGTTA TTAAATATAG TTTTTATTAA TCACTTTAAG ACATAAATTA TGAATTCATA
  Y
  CGTCTCCCTG AAATGCTTTT CAACTTTTAA CAGTCAAATT GATTATACTA TGATTATTTC
  ATTAACACAC CTATCTTCCT CATTAATTTT GGCTTCTAGT ACCACATGCT TAATTGATGG
  ACGTGTCTAC CAAAGACTGT GTAACTTTTT ATACAAGTAA CACTATTATT ACTGTCACTT
  CTGGGCTCAA TGCTAATGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51381531	NES13732422	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39792661					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51381531	NES13732422	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:98980868 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp1	forkhead box P1			Intron
				Noncoding-Transcript-Variant
Rr635315	regulatory region 635315			1856 bp distal
Tssr57961	transcription start site region 57961			678 bp downstream