rs39801772 SNP Detail

Summary

• ID
  rs39801772
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:71658620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATAGTTG TAGTTGATCA
  GGATATCTTG ACTTCTCCAC TCAGGAGTTC GATAATAGTA TCTACTTCAG AGACATGCTG
  TATTAAGAAA TGCTCAGTCT GACTAAATCT GACACAGTGT GAACCTAAAC CATCACTGTA
  TTTTATCAAT GTCCAGAACG GTGCATCCTG GATTCTTTCC TAAAAGATGA GATTAAGCCT
  R
  TGAGTCAGTG GCCTGCCCAA AAAATATAAA AAAATATAAA AACCAGGACT CAAAGGGTTA
  TTCAACAAAT CAGGGGCTAA TGTAAGTACC TATCTTGCTA ATAGCTTCAA AATTACATGA
  GAAGGGAATC TACAAAAGAC AAAAACAAAG ATATCTTTAT ACGGTAGCCC TGCAATTATC
  ACACTGAAGA CACAAAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51151420	NES13836586	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39801772					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51151420	NES13836586	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:71658620 () rs orientation: forward

Symbol	Name	Function Class
Cox7b2	cytochrome c oxidase subunit 7B2	within coordinates
Rr114123	regulatory region 114123	781 bp proximal
Rr131591	regulatory region 131591	741 bp proximal
Tssr51282	transcription start site region 51282	1379 bp downstream