rs39810015 SNP Detail

Summary

• ID
  rs39810015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:36394761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATTAAAG AAAAGAGTAT
  AAATGGCGCA CAATAGAAAT CTGAAAGGCA TCAAATCTGG AATTGAGAGC TTCTCCATTT
  TTCATGTGAT TTAGCACATA AGTTCTTACC TAATTGTAAA AGACTTGTGT AGTTTGTTTC
  ATAGAAGAGA AACCTTGACA TTCATCAGAC TCATTTTATG AAGTTATACC TGTTTATATT
  Y
  GTGCTAAATA AAAAAGGAAA CTTTGAACAT TTCACCTCCT TGGGTATCAG TTCTTCTGTT
  TTAATGAATA GGCAAATATT TATTAAATGA AACATTTATA AGTTTAATTC AATATTGTAT
  CCCATTCCAT TAACTCATAA AAAGAGAACA AAGCATGTGA CTATCTCAAT AGATGTAGAA
  AATAATTTGA AATTTAATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51094123	NES14363063	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39810015					SNP	C	T	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51094123	NES14363063	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36394761 () rs orientation: forward

Symbol	Name	Function Class
Fars2	phenylalanine-tRNA synthetase 2, mitochondrial	within coordinates
Gm40912	predicted gene, 40912	within coordinates
Rr279014	regulatory region 279014	1222 bp distal
Rr286029	regulatory region 286029	172 bp proximal