rs39826442 SNP Detail

Summary

• ID
  rs39826442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32629230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCA AACTTCATGG AAAATATTCC
  R
  TTCTGAATTG GGAGTAAGTC GCTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss50669218	NES14013670	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A	G	A	G	A	A
ss136250191	ENSMUSSNP2683973	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs39826442					SNP	A	A	A	A	A	G	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50669218	NES14013670	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32629230 () rs orientation: forward

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr368708	regulatory region 368708	486 bp downstream
Rr676236	regulatory region 676236	1402 bp distal
Rr676237	regulatory region 676237	within coordinates
Rr676238	regulatory region 676238	1702 bp proximal
Tssr84287	transcription start site region 84287	1173 bp downstream
Tssr88694	transcription start site region 88694	174 bp downstream