rs39833869 SNP Detail

Summary

• ID
  rs39833869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4839589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cctagccct ctagaaacag aatcaagttc
  aagtctaact tagagtatgt agtatttttc taaaaaaaaa aaaaAAAAAT CCTGTGCTTA
  ATGGCGATCC CTTTCACTAG CACATCGGTC CATATATCCC TTCTTCCGTG CTGGCCATCA
  R
  CCATAAGAAG TACTGTTATC CACACAATTT TGCTGGCAAG ATAACTGAAG CTCACAAGAA
  TTCCTGGCTA ACTTGGTTTA TGCACCAAGG ACCAAGCCCT TCAAAACTCC TTCCTTAATC
  CACTTTGCTC CCATGTTCAA CACTGGCTTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss50908956	NES13484807	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	G	G		A	A		G
ss148476112	ENSMUSSNP6329100	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss319612279	CHEV_1_4759447	CHEVERUD	SCREENING_POP	f	SNP									G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs39833869					SNP	A	A	A	A	A	G	G	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908956	NES13484807	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4839589 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	1765 bp upstream
Rr407421	regulatory region 407421	696 bp distal
Rr407422	regulatory region 407422	803 bp distal
Rr407423	regulatory region 407423	592 bp proximal
Rr407424	regulatory region 407424	689 bp proximal
Tssr5799	transcription start site region 5799	1728 bp upstream