rs39835421 SNP Detail

Summary

• ID
  rs39835421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89206529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCCTGTC TGTTTATCAT
  CCCCATTTGT AGGTATACAT ATCTTATCAC ATGTAGATGT CCCTCTGAAC CACATACCGC
  TTTGTTTGAC CTGACCTTGA GCTTTATGAG AAGCACACGT GCTGTGTGGG CTTTCGGGAA
  GTTTCTTTGC ACGCACACAC CTTCTCTGGT TCTCACACAG GCAGGCAGTG AGATCTCACC
  R
  TGCATTCTCT GAATGCAGGA AGGGAGGTCG CTTTCAACAG ATGAGAAATG CATGTTAGCG
  CCTCCCTTCC TTCCTGCTCA GTTCTGGTGT TCCCTTTGTG TGACTGTCCT GCCTTTCTAA
  CTGCATCTAG AACAGCCTTC TGGTTGGATC AATGTGGAAG GGGCCCATCC CTCTGGTTTG
  ACTGCCCTCC TGGGCACAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss50600519	NES14058069	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs39835421					SNP	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50600519	NES14058069	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89206529 () rs orientation: forward

Symbol	Name	Function Class
Gm34846	predicted gene, 34846	105 bp upstream