rs39846862 SNP Detail

Summary

• ID
  rs39846862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27860186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGATCTTG TTACGGATGG
  TTGTGAGCCA CCATGTGGTT GCTGGGATTT GAACTCTAGA CCTTCGGAAG AGCAGTCGGG
  TGCTCTTACC CACTAAGCCA TCTCACCAGC CCCTGACCCT ATTCTTGTTC CAGTCCAACA
  CCTTCCCTTC TGTCCCTGAC TCCTTCTGTG CCTTCCCACC TCATCCCTGA CCTCTGCCCT
  R
  CTCAGCCATT TTGGATTTGT GAAGCAGACA CCTAGAGGAA AGTCCACAGA GAGATACAAG
  CATTCGAGAC CTTGGGGTAC TAGTAGGACA CTCAACTCAC TGAACCTTAG TTCATGTCAA
  TGGATTCCAC CCTATGAAGA TTATTAGGGG ACGATTGTCC TGGTCATGTA CAGAACTGTT
  TTATCGTCAT GATCTCCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51887356	NES14907131	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs39846862					SNP	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887356	NES14907131	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27860186 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Rr170293	regulatory region 170293	987 bp distal
Rr380562	regulatory region 380562	547 bp upstream
Tssr65436	transcription start site region 65436	1330 bp downstream
Tssr65437	transcription start site region 65437	1267 bp downstream
Tssr65438	transcription start site region 65438	401 bp upstream
Tssr65439	transcription start site region 65439	1962 bp upstream