rs39904877 SNP Detail

Summary

• ID
  rs39904877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109677148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGACTCTTG GTTAGTAGAC
  TCCATGACCT GCTTCTTCTC AACACCATCC CTGAAGAGGT GTCCTGAGGC AACCTGGCAG
  ACATGAACCT TCTTACAGCT GTCCTTGCTG TCACGCGGTA CTTGAAGAAA TGGTTTACCG
  TCCCACATAC ATTTTGAGTA TGTATGTGGG ACGGTAAACC GCTTCTTGGT ATCCAGCCCA
  R
  CCATCCAGTC CATACCATCC TCGAGCAAGC CTGAAGTGAG AGAAGAAACG TTGTTTTGGC
  TTGCTCTCTA CATCGGGCTG CTTGGCCAAA CATCCCTCTG CTTTTTGTGT GCTTTCTCTG
  TTAATTCATG TGGCAAGGTG TTCCTGTCAG CTTCAGTGCA GCCCTTAAGG GCTTCTTCAA
  GGATGATGAC AACCTCCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51053029	NES14374807	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39904877					SNP	G	G	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51053029	NES14374807	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109677148 () rs orientation: forward

Symbol	Name	Function Class
B830012L14Rik	RIKEN cDNA B830012L14 gene	within coordinates
Gm54365	predicted gene, 54365	1065 bp downstream
Mir299a	microRNA 299a	14 bp downstream
Mir299b	microRNA 299b	21 bp upstream
Mir323	microRNA 323	1794 bp upstream
Mir379	microRNA 379	1589 bp downstream
Mir380	microRNA 380	1089 bp upstream
Mir411	microRNA 411	458 bp downstream
Mir1197	microRNA 1197	1603 bp upstream
Mirc6	microRNA cluster 6, including Mir379 through Mir544	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc44	microRNA cluster 44, including Mir1197 through Mir758	1603 bp proximal
Rr262534	regulatory region 262534	1251 bp proximal
Tssr115174	transcription start site region 115174	1588 bp downstream
Tssr115175	transcription start site region 115175	1104 bp downstream