rs39918995 SNP Detail

Summary

• ID
  rs39918995
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90885788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAAAC TTAACAGGAA
  GATGTTTTCT GGGGCTTTCT TCCCTGCTCA AGGACCTGAG TTTCTCTACA AGGATAAGAA
  CTCACACAAT CACCATCAGA AGAACTCACA GTCCACCCCA GACCAATGCC TGTGCCCACC
  CTCGTTACAC TCACCCCCAT GAACCCTCAC CATGTTTAAC ACCCACAAAC CCATCTAGAA
  Y
  GTGTGCAGAA AAACTGAACA GGTGTGACCC GTCGGGCCAT GGGTCCAAAT ATAACCTCAT
  GAAGTGTTCG GATTGTCAAG ACGTTTAATA TTTGGAGAGA AGGACATGAG ACAACACGGT
  GTTCATCTCG GGACAGGGGT TTTAGAGTCC TCAGATCACT AGGTAGAAAC CTGGCTCTGT
  CCATCCACCG CTGGAAGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss51301126	NES14511546	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs39918995					SNP	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51301126	NES14511546	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90885788 () rs orientation: forward

Symbol	Name	Function Class
Rab17	RAB17, member RAS oncogene family	67 bp downstream
Rr415504	regulatory region 415504	917 bp distal
Rr415505	regulatory region 415505	1163 bp distal
Rr415506	regulatory region 415506	1016 bp distal