rs39920256 SNP Detail

Summary

• ID
  rs39920256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:24686339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGGGTGC CTGTAGGAAG
  GATACTTTGT TTTGATTTTT TGTTTGTTTT TGTTGATTTT GTTTTTGGCG AACCTGGCTT
  TCTGCTGTGT GGTGGTTTGT TTCCCTTCTA GTCTGGGTTT TCTATTCTGG AGACTCTGAA
  AGTAGGGAAG TGGCCTGAAG CAAGGAGGGG GGGTCAGGAC TTGGAGCTCT AAGGGGACCA
  Y
  GCGATGCATA GTGACTTTCT GGCTCCTCCC CCGCCCCCCC CCCACACGGA ACCATCTATC
  TGCCTTGCAG ACGCAGACTG GGCTAAGGAC TTCCCACAGC CTTGTGGAGG GAGTCCTGTT
  GGCCTTGCTC AGTCTAAATA ATTCGAATTC TCCAAATTCG CGGGGTAATC CGCTTCACTC
  TCAACCATGT AAACTCTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50654653	NES14025688	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39920256					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50654653	NES14025688	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:24686339 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21501	CpG island 21501	299 bp distal
Gm29824	predicted gene, 29824	681 bp upstream
Rr675417	regulatory region 675417	250 bp distal
Rr675418	regulatory region 675418	238 bp proximal
Rr675419	regulatory region 675419	739 bp proximal
Rr675420	regulatory region 675420	1189 bp proximal
Rr675421	regulatory region 675421	1947 bp proximal
Tbx20	T-box 20	759 bp upstream
Tssr88515	transcription start site region 88515	1861 bp upstream
Tssr88516	transcription start site region 88516	752 bp upstream