rs39921698 SNP Detail

Summary

• ID
  rs39921698
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:51727502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAACTTAA GCTCTTCCCT
  GCATCTTTCA AACTCTGACA TCCACAGGTA TTACAGTCAG TAACAAGCAC AGCTTACAGT
  CTCCCATGCT CACCACATAC AGGTTTTCAC ATAATCCAAA CGATACACCA ATGCCTAACT
  ACTTCTCAAT CCCATCTGAA CACATGAGGT AACTAAAGCT GGTTAAGGCC AACTTCTTAG
  R
  GCCACAGAGA CTAAGTCTAT AAACATCAGG TTATATTAAA CAACAAACAC AAAAAAGCCT
  CATGACAATC TAACTAAACT ATAGTCCAAA GTGAAATTAC TAATAATTTC CACTTAAACA
  CTGCCTGCTG CAATCACAAT TTTCACATAA ATTAAAAAAT CCCTATTACA AGAGTCTTTA
  GCCGGGCATG GTGGCGCACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51665665	NES14579676	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A		G	G	G	G		A
ss324965539	CHEV_15_51695652	CHEVERUD	SCREENING_POP	f	SNP								G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39921698					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51665665	NES14579676	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:51727502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7083	CpG island 7083	928 bp proximal
Eif3h	eukaryotic translation initiation factor 3, subunit H	within coordinates
Rr311732	regulatory region 311732	within coordinates
Rr404375	regulatory region 404375	1339 bp upstream
Tssr134286	transcription start site region 134286	1342 bp downstream
Tssr134287	transcription start site region 134287	1392 bp downstream