rs39945808 SNP Detail

Summary

• ID
  rs39945808
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130536936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGTAGT CTGAGGATTC
  CAGCCAGACA CAAAAGTACT TCTCATATCA GAGACTGTGT GTGTGTGCAT GTGCATATGC
  GTGGGTGTGT GTCTCTCTTA CCCCTCTCTT ACCCCTTGAT GTGTGGGACT TGGACGAAGT
  TGAGGCTTAC CTCGGGGACT GCTTTGAGGG GAGTTGTTTT AAGGAATTCT GCACAAGGGA
  R
  CAACCCGGAT GTAGATTAGC GCCCTATCAG CGACTCCTCC TTGAGTCAGG GTCAGCAGCA
  CTCTGCCCAC CACCCTGGGG TGTGTTATGG CGAGGTGCAT GGGGAACTCA GGTGGGGACA
  GCACATACTT TAATTCTCTC ATCTTCCAAT ACAAGATTTA TGTGTTCTGT GTTGGCCAGG
  CACAGAGATC TGCCTCCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50475015	NES14114272	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39945808					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50475015	NES14114272	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130536936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19812	CpG island 19812	274 bp proximal
Htra1	HtrA serine peptidase 1	997 bp upstream
Rr656402	regulatory region 656402	507 bp proximal
Tssr69536	transcription start site region 69536	954 bp upstream
Tssr69537	transcription start site region 69537	966 bp upstream
Tssr69538	transcription start site region 69538	1051 bp upstream