rs39952387 SNP Detail

Summary

• ID
  rs39952387
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73968939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gagtaattt gctcaggaca caaaaccagc
  ctagggctgt gcctagcacc atgtctccaa cctcacaata taggttctgg ctgGCCTAAG
  GGAACCCACA GTCTCACAGG GACACCAACA CATGAGCCAG AGAAATGTCA GATCGACAGG
  R
  TCACCCGTAG TGGCAAAAAC AGCCAAGAGT CAGTCATGTG AGGTTTGTAA GGTATGGAGA
  GCGTAAGTAC CCAGCCCGTA TGGGGCAGAG GTGGCATAGG TACCCAGGCA AGACAGTCTT
  CCAGCCAGCT GTTACTCACA GGTCCTAAGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51276632	NES14517781	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		A	G	A	G		A
ss319792983	CHEV_1_73976354	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39952387					SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276632	NES14517781	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73968939 () rs orientation: forward

Symbol	Name	Function Class
Rr34544	regulatory region 34544	within coordinates
Tns1	tensin 1	within coordinates
Tssr117	transcription start site region 117	1284 bp upstream
Tssr12216	transcription start site region 12216	1251 bp upstream
Tssr12217	transcription start site region 12217	422 bp upstream
Tssr12218	transcription start site region 12218	936 bp downstream
Tssr12219	transcription start site region 12219	1005 bp downstream
Tssr12220	transcription start site region 12220	1029 bp downstream