rs39972673 SNP Detail

Summary

• ID
  rs39972673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12732026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGCCCCAG GCCAACCAGC AGAAGCAGCA ACAGCAGTAA
  GGTTAGTTTC TTCCAAATAC CCATGGCATT GGCTCTTTCT GAAGTAGATG AGAGCGTGTA
  R
  TCTCTCTTAG CTCTGATGAG TGCTCCAAAG CCCTAACTAC CTGCCTTTAA GGAAATCTGT
  CTACCCACTT CCCAAATATG ACCAAGTACT ATCAGCAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51468901	NES13984160	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A			A	G	A		G
ss148342450	ENSMUSSNP4855871	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
ss322107109	CHEV_7_13583448	CHEVERUD	SCREENING_POP	f	SNP								A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs39972673					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51468901	NES13984160	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12732026 () rs orientation: forward

Symbol	Name	Function Class
Rr642427	regulatory region 642427	41 bp proximal
Slc27a5	solute carrier family 27 (fatty acid transporter), member 5	within coordinates
Tssr2079	transcription start site region 2079	977 bp upstream
Tssr64508	transcription start site region 64508	1022 bp upstream
Tssr70630	transcription start site region 70630	646 bp upstream
Tssr70631	transcription start site region 70631	428 bp upstream
Tssr70632	transcription start site region 70632	11 bp downstream
Tssr70633	transcription start site region 70633	41 bp downstream
Tssr70634	transcription start site region 70634	73 bp downstream