rs39988095 SNP Detail

Summary

• ID
  rs39988095
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:72836821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGATGATG AGGGTAAGGA
  TAGTTCACAC GGTGCTGTGT TCAATGGCTA TGAGCTGCAA GCAGTCCATC TTTGCTAGAG
  CCTTGAAGGT CAAATTGACA CCAGAATCTC AAATACACTC AGAAATAAAT GCCTATACAT
  TTGTCAGTTG ATGACCGGCT CTGCCGGACC AAATGCCTTT TCAGCTATAA TTCCACAGGT
  R
  CTTCAGAGCA CTATCCCAGC ATGGCCTTGT CCTGGACTGC ATGGGGTTCA TTCTTCATCC
  TCAATGGTCA GGAGCCACTT CCAACAGGTG CCCAGGGAGG ACAAAGGATC CAGGTATGCT
  TGTCTAGTTC AGGTTTGAGG TTATCAGTTA TTTCTTTGTA GCTTCATAGC TTGAAATCTA
  AAGAGAAGGC TTAGATAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51500061	NES13955889	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39988095					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51500061	NES13955889	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:72836821 () rs orientation: forward

Symbol	Name	Function Class
Gm20083	predicted gene, 20083	within coordinates
Gm28746	predicted gene 28746	1680 bp upstream
Rr648887	regulatory region 648887	1691 bp distal
Rr648888	regulatory region 648888	1458 bp distal
Rr648889	regulatory region 648889	887 bp distal
Rr648890	regulatory region 648890	337 bp distal
Tssr67187	transcription start site region 67187	1298 bp downstream
Tssr67188	transcription start site region 67188	1264 bp downstream