rs40000705 SNP Detail

Summary

• ID
  rs40000705
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27798353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGTTTGT TTATTTGTTT
  TTCCTTTTTT TTTCCTTTCT GTGTAGCCAT GGCTGTCCTA GAACTCGATC TGTAGACCAG
  GCTGGCATTG AACTCACAGA AATCTGCCAG CCAAGTACTG GGATCAAAGT CATGCGCCAC
  CACGTCCCAG CAACACTGCT TTTCTTAAGA ACTATGCTTT ATTAACATAG GTCAACTACA
  R
  AAAAGGAGCG CATTTGTGAT CTCACTCCAG GCATCTTTTC ATTACTGTGT TACTGTGTTA
  CTCCCCCTCT CTGTCTCCTT TCTCTTCCAC GTCTCTATCT GTCCCCGACC CTGACTTTCC
  AGTTTCACGT CCTTTTCCTT CCCTAACTTC CACGCGTGAG AGAAAACTTT ATAATGATGG
  CACCATCGGC CTTCAGTCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51887577	NES14908009	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs40000705					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887577	NES14908009	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27798353 () rs orientation: forward

Symbol	Name	Function Class
Fcgbp	Fc fragment of IgG binding protein	within coordinates
Gm10935	predicted gene 10935	732 bp downstream
Gm21925	predicted gene, 21925	within coordinates