rs40004214 SNP Detail

Summary

• ID
  rs40004214
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:73099840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGGAGG CTGGGGGAGG
  GGCTGGGGTT TGGCTTCTGC AGCCTGTCAC CCCTCCCCCA CCTCTGGAGC CTTTGTGACG
  GAAGAGGCTG GAGTTCTGTG ATTCAGGCCT GAGTTCAACT GAGTTACCAC CTGGCTGACC
  CACTGTCACT TGGCAGTTCA GCGGTCCCTG CTGAGCAGGA CAAGGACTGA GGACATCCGC
  R
  GAGGGTTCCA CATAGATGTA ACCGGCTGAG GCTGGAGCAG ATGCTGTCGG GTATGTGGGG
  AGGAACACTG TTACCTGGCA GCTCAGAGGT CCCTGCTGAG CAGGTCAGGG ATTGAGGACA
  TCTGTGGAGG ATTTCGCACA GATGTAACCT GCTGAGACTG GAGCAGATGC TGTCAGGTAT
  GTGGGGAGGA ACACCGCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50745844	NES14235225	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs40004214					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50745844	NES14235225	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:73099840 () rs orientation: forward

Symbol	Name	Function Class
Gm27211	predicted gene 27211	within coordinates
Rr682926	regulatory region 682926	39 bp distal
Rr682927	regulatory region 682927	within coordinates
Tssr86094	transcription start site region 86094	100 bp downstream
Tssr86095	transcription start site region 86095	89 bp downstream
Tssr86096	transcription start site region 86096	73 bp downstream
Tssr86097	transcription start site region 86097	44 bp downstream