rs40030054 SNP Detail

Summary

• ID
  rs40030054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134807266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCCAATC AGCCTGCAGA
  GCCCCGCCCC CCTCGGGTTG GGCCGCTTGC CAGTGCGTCT GTAAACACGC CGGGAGCCTG
  TCATGGGGCG GGAGGAGGAG GCGGTGGCCG AGCGGGGAGG TGCCTGGGGC AGCCTCCAGG
  GTCCGCTCTG CCATTCCTGA ACTGGTCCGG GTCCCCGTGA CCGTGGCTTC AGGGAAGCGA
  R
  CTGTTAGGCG AAGGAGGAGG CAGTCAGAGC CATATCCCCT TCTTCCCCGG GGCGGGGGCC
  GGGCCTGGCC CGCTGAGGAG AGGGAGGGCC GGGAGGGCGT CGGGCCGGGC CGGCCTGTCT
  GCGGAGATGG ATGACAGCAA GGTAAGTCCT GAGCTGGCCG CCGCCGCCTG CTTGTCGCCG
  CACGTAGTCT CGCCGCCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51438863	NES14009633	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs40030054					SNP	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51438863	NES14009633	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134807266 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18077	CpG island 18077	within coordinates
Crebl2	cAMP responsive element binding protein-like 2	within coordinates
Gm67917	predicted gene, 67917	208 bp upstream
Rr368197	regulatory region 368197	39 bp downstream
Rr639726	regulatory region 639726	1561 bp distal
Rr639727	regulatory region 639727	1777 bp distal
Rr639728	regulatory region 639728	219 bp distal
Rr639729	regulatory region 639729	38 bp distal
Rr639730	regulatory region 639730	within coordinates
Rr639731	regulatory region 639731	158 bp proximal
Tssr59250	transcription start site region 59250	124 bp downstream
Tssr59251	transcription start site region 59251	33 bp downstream
Tssr59252	transcription start site region 59252	16 bp upstream
Tssr59253	transcription start site region 59253	461 bp upstream
Tssr59254	transcription start site region 59254	729 bp upstream