rs40040454 SNP Detail

Summary

• ID
  rs40040454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21136697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACC ACAACCTCGC CCTTGGATGA
  Y
  AGCCGAAGCC TTTCGCATTT TGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss51993420	NES15015896	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs40040454					SNP	C	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51993420	NES15015896	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21136697 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21428	CpG island 21428	within coordinates
Gm16754	predicted gene, 16754	within coordinates
Rr383053	regulatory region 383053	497 bp downstream
Rr674756	regulatory region 674756	1885 bp distal
Rr674757	regulatory region 674757	655 bp distal
Rr674758	regulatory region 674758	within coordinates
Rr674759	regulatory region 674759	19 bp proximal
Rr674760	regulatory region 674760	970 bp proximal
Rr674761	regulatory region 674761	1472 bp proximal
Tssr83977	transcription start site region 83977	13 bp downstream
Tssr83978	transcription start site region 83978	within coordinates
Tssr88378	transcription start site region 88378	447 bp upstream