rs40044101 SNP Detail

Summary

• ID
  rs40044101
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:127767096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTACTCC AGGCAGGGAA
  AACAACTGTG ATTCATGTCA CAAGCACTGC AGACTGAAGC TGCCAGAAGC TTCCACAAGA
  TGTCTGCAAG CTTCTAGTCT TCCAGTGAGG CAGGGAAGAG AGGACGACAG GGAGACGGGA
  AACCGCCAGC TAGAAAATCA CAGGCAAGGG CGGAGGTGGC GCTGTCACGT GCATTTTGCA
  R
  CCAGTCCTCC ATGAGCCTTT CTGGCTTTTG AGACCTGAAA ACTAGAGTCC ACCGGACCTG
  TGATGCAAAA GTCAGTCGTG GTGCAATCCA AAGGGTCGAC AGAGAGTACA TGAGTCATAA
  CGGTTGAGAA GGGGCGGGGA ATCCCCCAGA GACACCGACT GCAAACAGTA CTTGTAAGTA
  CTTGACTTTT ATAAAAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51864542	NES14885864	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs40044101					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51864542	NES14885864	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:127767096 () rs orientation: forward

Symbol	Name	Function Class
Gm40402	predicted gene, 40402	within coordinates
Gm66979	predicted gene, 66979	219 bp upstream
Mir7233	microRNA 7233	1990 bp upstream
Rr151534	regulatory region 151534	within coordinates
Tssr59045	transcription start site region 59045	217 bp upstream