rs40044897 SNP Detail

Summary

• ID
  rs40044897
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:121258962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGAGGTG CAGGACAAGG
  GCCTTTTGGG GGGACAGCTC CTGAGTGGGG TAGGGTAGGG AGGCGGCGGG GGGTGTTGTC
  TCCTCCATGG CTCGCCACTG TGTGATGAGG GTGTAAAGTT GCCAGACCAG GCTGGGCAAG
  CAGAGAGAAG AGGCTGTAAT GGAGTTGGGG GTGATGGTAA CTGGGGACTT CTGAGGCTTG
  S
  ACTGTGGACA GCTGTAGGGC TCTCCCCAGG AATTCACAAG CCAAGAACTT GGACCTGAGC
  AGGGCCAGGC CACTGAGAGC AGTTGGTGAC AGAAATGTAG TGCCAGCAGT CTCAAACCAC
  CTCCTGGGAG TCTCTGTCCT CTGGAAGGAG GGTCCAAGCA ACCCCCTTCC ACCCCTTCCT
  CCCCTGCCAG GCCCTGGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51983583	NES14997533	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs40044897					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51983583	NES14997533	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121258962 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21149	CpG island 21149	640 bp proximal
Gse1	genetic suppressor element 1, coiled-coil protein	within coordinates
Tssr83195	transcription start site region 83195	374 bp downstream