rs40075986 SNP Detail

Summary

• ID
  rs40075986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151995221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGAGCAT GCTCTGGGGC
  TAGTGAGATG GTTCAGCAGG TAAGAGCACT GACTTCTCTT CTGGAGGTCC TGAGTTCAAA
  TCCCAGCAAC CACATAATGA GATCTGGTGC CCTCTTCTGG TGTGTCTGAA GTCAGTCACA
  GTGTACTTAT GTATAATAAT AAATAAATCT TTGGGCCAGA GCAAGCAGGG ACTGAGCGAG
  Y
  GGAGTTGATT GGAGCAAGCA GGGCCGACCT GAACGAGCAG AGGTCCTAAA AACTCAATTC
  CCAACATCCA CATGAAGGCT CACAACCACC TGTACAGCTA TAGTGTATTC ACATACATTA
  AATAAATAAA TAAATAAATC TAAAAAAAAA AAAAAACTTA AGAAAAAAAA GAGCATGCTC
  GGTACTTTCA GAGGACCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51060130	NES13425250	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs40075986					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060130	NES13425250	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151995221 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Tssr32405	transcription start site region 32405	742 bp upstream