rs40077540 SNP Detail

Summary

• ID
  rs40077540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131016034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGGGATA GAGCAACCAC
  AAACACAGAG AGCTGGCTTC ATCTGAGGCT GTCACAGGTT CCGGATGGGA CGCAGGGTTT
  CTTCACCTCT GCCTCAGGTT CAAAGCCATG GGGACTAGTG CGGCCTGGCG TGAAGGAACT
  GACCATGCCT TTGGTTTCCT CTGCCTCCAT TGGTCATGGC GTCTCATTTG ACCTTTAATC
  R
  ACTGGTAAAA TCTCAGGTCA CTAAGACTTT GGGGACTAGG GAGTCTTGGT TTTGAAAAGC
  ATCCGTTGTT TTAAATTGCT TGCAGAGTGA TTCATTCGAG ACAAACAGTA AATGTCTTCA
  TGTGTATGGA GGGAGTCGTC TTGAGAATTA GGTGGAAATG GAGGGGTCCC CACCCCCTTG
  GACCGTAATA ATGAACAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51634217	NES14648973	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs40077540					SNP	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51634217	NES14648973	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131016034 () rs orientation: forward

Symbol	Name	Function Class
Lef1	lymphoid enhancer binding factor 1	within coordinates
Tssr31723	transcription start site region 31723	406 bp upstream
Tssr31724	transcription start site region 31724	1443 bp upstream
Tssr31725	transcription start site region 31725	1553 bp upstream