rs40111632 SNP Detail

Summary

• ID
  rs40111632
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75415009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGCTTCT GTGGTTGTTT
  TTCCTTTTTT TTTTAAATCT TCCTTAGAGT CAGTTGGTGG ATATGTTAAC ATCTTAGGTC
  GTATGTTACC AAGGGTGGCC TGGCAGTGTG AGTGATTTTT GACAATGAGG TTTTTAATGC
  CCATGTTTTC TGACTACACA AAATATGAGA GGTCTTCTCC ATTCAGTCTC CAAAAAACAA
  R
  AGCAATTGTG TTGCTGGCTT CTGCTACTTC TTGTAGGGCT GTCTGGATTA TTTGTTAAGG
  CTGAAGGCCA TGCAAATGAA TGTCTCTACA TTTTGGAGGA AAGGTCCTGT CTACACAGGG
  AATTCTTTTA AGCGACTGAA GCATATAGCC TCGAAGTATT GTACCATCTC TCAGCTTGTA
  TTCATTTAGA ACTGTCAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533173	NES14628266	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs40111632					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533173	NES14628266	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75415009 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	441 bp upstream
Rr404213	regulatory region 404213	587 bp downstream
Tssr126623	transcription start site region 126623	964 bp downstream
Tssr126624	transcription start site region 126624	926 bp downstream
Tssr126625	transcription start site region 126625	772 bp downstream
Tssr126626	transcription start site region 126626	747 bp downstream
Tssr126627	transcription start site region 126627	665 bp downstream
Tssr126628	transcription start site region 126628	415 bp downstream
Tssr126629	transcription start site region 126629	240 bp upstream
Tssr126630	transcription start site region 126630	279 bp upstream
Tssr129769	transcription start site region 129769	966 bp upstream
Tssr129770	transcription start site region 129770	887 bp upstream
Tssr129771	transcription start site region 129771	832 bp downstream
Tssr129772	transcription start site region 129772	1688 bp downstream