rs40142850 SNP Detail

Summary

• ID
  rs40142850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151959214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGACAGGGG AGCACACGGA AGTCAGCTCA CAGACGTGAA
  AAGCAGTGTT AACCGTGGTC TATATGAAAT GTTAGTGGGA ATAATGCATA AATATGAAGA
  R
  CGTGAACATT TTCACAAGAA TAAAATAAAA TGACCTCCTG CTTTCTCCTG TTCCATTCTC
  TCTCTCTAAT ATATTGTTCT TTTCTTCTTT GCTTTTCGTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51060228	NES13426057	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs40142850					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060228	NES13426057	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151959214 () rs orientation: forward

Symbol	Name	Function Class
Gm43185	predicted gene 43185	774 bp upstream
Nexn	nexilin	Intron
Tssr1100	transcription start site region 1100	664 bp downstream
Tssr32404	transcription start site region 32404	31 bp upstream
Tssr36193	transcription start site region 36193	728 bp upstream
Tssr36194	transcription start site region 36194	614 bp upstream
Tssr36195	transcription start site region 36195	501 bp upstream
Tssr36196	transcription start site region 36196	474 bp upstream
Tssr36197	transcription start site region 36197	443 bp upstream
Tssr36198	transcription start site region 36198	103 bp downstream
Tssr36199	transcription start site region 36199	118 bp downstream
Tssr36200	transcription start site region 36200	142 bp downstream
Tssr36201	transcription start site region 36201	178 bp downstream
Tssr36202	transcription start site region 36202	224 bp downstream
Tssr36203	transcription start site region 36203	1756 bp downstream
Tssr36204	transcription start site region 36204	1778 bp downstream