rs40159164 SNP Detail

Summary

• ID
  rs40159164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:68727474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGACTG ACTTACTACA
  ATACAAATGG CCCGCCCGTC TTCAAGGAAT TTGAGAGTGG CTTAACCAAG CAATATCATG
  AATTTTCAGT AAAGCCTCAC ACCAGTATTG TAGTTACTAC ACAGCTTGAC AGCAGCTGAG
  GATCTTCTCA TTTAATCTGT GTGGGTTTAG CCTTTCTGGG TAGATCTCTA AAGGATGACT
  Y
  GCTATGGAAA TTCTTATCTC TCAGCATGAA TGTTTCAAGG GTATGGGAGA CAGAGGGGGA
  AGGAGAAGGG ATGACGGGGA AGAGACAGGG CTACAGACAA CGCAGAGCTA CAGGCTTTAT
  TTTCTCATCT TCTCACTGGG AATCTAGGCC TGAAACTAAG TAGCTCACAC TGGCCTGGAA
  CTGCTATCTC TCTATTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50562561	NES14070978	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs40159164					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50562561	NES14070978	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:68727474 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20401	CpG island 20401	1743 bp proximal
Rr382222	regulatory region 382222	1688 bp downstream
Rr664392	regulatory region 664392	1749 bp distal
Rr664393	regulatory region 664393	1255 bp proximal
Rr664394	regulatory region 664394	1756 bp proximal
Sh2d4a	SH2 domain containing 4A	1745 bp upstream
Tssr77594	transcription start site region 77594	1869 bp upstream
Tssr77595	transcription start site region 77595	1891 bp upstream
Tssr77596	transcription start site region 77596	1981 bp upstream