rs40188219 SNP Detail

Summary

• ID
  rs40188219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:65938943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCTGACT GCTGCCAGAC
  CTGTGTTGAA TATCGAGAAT GCAGTTCTGA ACAAGGTGCG GAGTGATCTC TGCCACTGTG
  AAATTCACAG TCTAGTGCGA AGACGAGTGA GTGAGTGAGT GTGTGCATGG CTGGTGGTGA
  TAGATGCTGC GAGGAGACGC GGGCTGCAGA GAACAGGAAG CGGGAAGGCG AGCTGGCCTG
  Y
  GGCAGAGACT GGCAAGCTCC AGTGCTCTGC CAGCTTTTAT AAAATTCTCT TGGCACATAG
  CCGTGCAAAT CCTTTTAGAT GTTGTCTGTG GCTACTTTCC CAATCCAACA GCTTTGATCG
  TTACTCTGTG GCTTATAAAC CTAAACTATT TACTATCCGG CCCTTTAAGT AGAAAGTTTG
  GTGACTCTTG GTCTCCCACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50440834	NES13452773	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs40188219					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50440834	NES13452773	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65938943 () rs orientation: forward

Symbol	Name	Function Class
Rr539619	regulatory region 539619	within coordinates
Sec11c	SEC11 homolog C, signal peptidase complex subunit	within coordinates
Tssr151702	transcription start site region 151702	254 bp upstream