rs40248943 SNP Detail

Summary

• ID
  rs40248943
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70702889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCCAGTTC CTCCCAGGCA GGTGGCCCAG ATTACAGTTG
  ACCTGTTCTG GTGTGGCTAA AAATTGTCCC ATGTGGTTAC AAACCATTAG ACCAGGGTCT
  S
  ATGAATTGCT CAGAATATTT CTGGACACCC AAATACAGAC CCTGGCTTAA GGCCCTGTCC
  ATACAGTAGG TTTAGCTTGG CTACACCAAA GGAAGCCATA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676668	NES14820444	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs40248943					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676668	NES14820444	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70702889 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	541 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	530 bp upstream
Igkj5	immunoglobulin kappa joining 5	1982 bp downstream
Rr158	regulatory region 158	46 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	470 bp downstream
Rr399685	regulatory region 399685	58 bp downstream
Rr399686	regulatory region 399686	606 bp upstream
Tssr1880	transcription start site region 1880	945 bp upstream
Tssr56956	transcription start site region 56956	72 bp downstream
Tssr56957	transcription start site region 56957	525 bp upstream
Tssr56958	transcription start site region 56958	572 bp upstream
Tssr56959	transcription start site region 56959	590 bp upstream
Tssr56960	transcription start site region 56960	613 bp upstream
Tssr56961	transcription start site region 56961	627 bp upstream
Tssr56962	transcription start site region 56962	635 bp upstream
Tssr56963	transcription start site region 56963	684 bp upstream
Tssr56964	transcription start site region 56964	699 bp upstream
Tssr56965	transcription start site region 56965	705 bp upstream
Tssr56966	transcription start site region 56966	716 bp upstream
Tssr56967	transcription start site region 56967	731 bp upstream
Tssr56968	transcription start site region 56968	755 bp upstream
Tssr56969	transcription start site region 56969	791 bp upstream
Tssr56970	transcription start site region 56970	804 bp upstream
Tssr56971	transcription start site region 56971	824 bp upstream
Tssr56972	transcription start site region 56972	850 bp upstream
Tssr56973	transcription start site region 56973	888 bp upstream
Tssr56974	transcription start site region 56974	920 bp upstream
Tssr56975	transcription start site region 56975	953 bp upstream
Tssr61321	transcription start site region 61321	577 bp downstream
Tssr61322	transcription start site region 61322	742 bp downstream
Tssr61323	transcription start site region 61323	757 bp downstream
Tssr61324	transcription start site region 61324	847 bp downstream
Tssr61325	transcription start site region 61325	913 bp downstream
Tssr61326	transcription start site region 61326	948 bp downstream
Tssr61327	transcription start site region 61327	962 bp downstream
Tssr61328	transcription start site region 61328	1053 bp downstream