rs40365679 SNP Detail

Summary

• ID
  rs40365679
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4262991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGTTCAG AAAAGGGGGG
  GGGGGGTGAG GGAGAAAGAA AGGAAGGGAA AGAGGGGAAA AAAATAGAAA GAAACACCCC
  AACAACAAAG TCTGTCCCAC TCCAGTGAGG TAATTGAAAA CAAATTTTTT CCCAACCCCC
  CCACCCCCCC ACCCCAGTTC TCCAGTGCAG AACAGGGAAG TGCCGCCCTG GGAAACTAGC
  M
  CTGGCCATGA CTGATGCCCA CGCTGACCCA CAGGCTGGAG GGGCTGTGTT GGACTGGCAG
  AGTGCCCTCC TTTCCCAGGG GTCCCAGCAG AAGTGGGGGG GGGGGTGAAT ACCTCATGCC
  ATTCCAGAGA CAGGCATCAC CTTCCACGGC TGGCTGCCAC CGCTATCTAC CCCTGGTGAG
  ACTACAGAGA AACAACACAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50585360	NES13654272	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs40365679					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50585360	NES13654272	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4262991 () rs orientation: forward

Symbol	Name	Function Class
Clcf1	cardiotrophin-like cytokine factor 1	1488 bp upstream
Cpgi10392	CpG island 10392	1217 bp proximal
Gm45928	predicted gene, 45928	1420 bp upstream
Gm59210	predicted gene, 59210	within coordinates
Rr358111	regulatory region 358111	391 bp distal
Rr363316	regulatory region 363316	within coordinates
Rr405789	regulatory region 405789	1228 bp upstream
Tssr154300	transcription start site region 154300	1414 bp upstream
Tssr154301	transcription start site region 154301	1430 bp upstream
Tssr154302	transcription start site region 154302	1446 bp upstream
Tssr154303	transcription start site region 154303	1479 bp upstream