rs40472716 SNP Detail

Summary

• ID
  rs40472716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45314511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGGGTAAG AGTCCCCTCA CCAGCCCCTC CTCCTGCCTC
  ATTCCTCCTG TCCCAACCCA GCTCATCCAG TGTGAAAGAA GGAAGTGCCA CTGTTCCCAT
  Y
  CAAGCCCCAG GCAAGGGCAG GCACTCCCTG GCTCCTGCGT ACCTCAGACA CCTCCAGCAG
  CTCCTACCAT GGACAGGTGG TACCTGGGTG AGTCTCCCAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52013362	NES15030357	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs40472716					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013362	NES15030357	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45314511 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195106	regulatory region 195106	1111 bp distal
Rr200381	regulatory region 200381	1311 bp distal
Rr209195	regulatory region 209195	1490 bp proximal
Tssr84783	transcription start site region 84783	639 bp downstream
Tssr84784	transcription start site region 84784	587 bp downstream
Tssr84785	transcription start site region 84785	55 bp downstream
Tssr84786	transcription start site region 84786	24 bp downstream
Tssr84787	transcription start site region 84787	3 bp downstream
Tssr84788	transcription start site region 84788	14 bp upstream
Tssr84789	transcription start site region 84789	40 bp upstream