rs40490319 SNP Detail

Summary

• ID
  rs40490319
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:20988931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTCCCAT GGCACACCAT
  ACAAGAAGAA AGAAGAAAAT GGAAAAACAA AAAGAAAAGA AACTATAATT CGGGTGGGAA
  CGGGCAGGCA GACTCTGTTC AAAACACTCA AGTCGTTGAA CTCTTGGGGT GGGAGAGCAG
  GGTCTATCTG TGCAGTATTG TCCGTTTGCT TTAAGGCTTC AGTACTCTGG CTCTCACCTA
  K
  TCTCAGTCAA GTGCCTCAAA CTATGATGAA GAGACATTTT TTTTTCTTTT CCATTTTTTA
  TTAGGTATTT AGCTCATTTA CATTTCCAAT GCTATACCAA AAGTCCCCCA TAGCCACCCA
  CCCCCACTCC CCTACCCACC CACTCCCCCT TTTTGGCCCT GGCGTTCCCC TGTACTGGGG
  CATATAAAGT TTGTGTGTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51232298	NES14289200	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs40490319					SNP	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51232298	NES14289200	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:20988931 () rs orientation: forward

Symbol	Name	Function Class
Paqr8	progestin and adipoQ receptor family member VIII	within coordinates
Rr407023	regulatory region 407023	1251 bp proximal
Tssr6058	transcription start site region 6058	853 bp downstream
Tssr6059	transcription start site region 6059	848 bp downstream