rs4135791 SNP Detail

Summary

• ID
  rs4135791
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164173933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC TAAAAACACA ACAAAACTTA
  M
  TGGTCTGCTG ACATCAAGGT TAGTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss5106553	WI_WGS_2_165281263	WI	MOUSE	f	SNP	A		C
ss148222998	ENSMUSSNP4853391	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs4135791					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164173933 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	752 bp upstream
Tssr744	transcription start site region 744	1316 bp upstream
Tssr745	transcription start site region 745	1359 bp upstream
Tssr746	transcription start site region 746	1370 bp upstream
Tssr747	transcription start site region 747	1383 bp downstream
Tssr748	transcription start site region 748	1404 bp upstream
Tssr749	transcription start site region 749	1436 bp upstream
Tssr750	transcription start site region 750	1449 bp upstream
Tssr751	transcription start site region 751	1503 bp upstream
Tssr752	transcription start site region 752	1572 bp upstream
Tssr753	transcription start site region 753	1579 bp upstream
Tssr21562	transcription start site region 21562	710 bp upstream
Tssr21563	transcription start site region 21563	727 bp upstream
Tssr21564	transcription start site region 21564	746 bp upstream
Tssr21565	transcription start site region 21565	771 bp upstream
Tssr21566	transcription start site region 21566	781 bp upstream
Tssr21567	transcription start site region 21567	795 bp upstream
Tssr21568	transcription start site region 21568	805 bp upstream
Tssr21569	transcription start site region 21569	1282 bp upstream
Tssr21570	transcription start site region 21570	1344 bp upstream
Tssr21571	transcription start site region 21571	1375 bp upstream
Tssr21572	transcription start site region 21572	1392 bp upstream
Tssr21573	transcription start site region 21573	1421 bp upstream
Tssr21574	transcription start site region 21574	1485 bp upstream
Tssr27433	transcription start site region 27433	1340 bp downstream
Tssr27434	transcription start site region 27434	1363 bp downstream
Tssr27435	transcription start site region 27435	1391 bp downstream
Tssr27436	transcription start site region 27436	1410 bp downstream
Tssr27437	transcription start site region 27437	1431 bp downstream
Tssr27438	transcription start site region 27438	1461 bp downstream
Tssr27439	transcription start site region 27439	1475 bp downstream
Tssr27440	transcription start site region 27440	1485 bp downstream
Tssr27441	transcription start site region 27441	1540 bp downstream
Tssr27442	transcription start site region 27442	1548 bp downstream
Tssr27443	transcription start site region 27443	1611 bp downstream
Tssr27444	transcription start site region 27444	1620 bp downstream