rs4135812 SNP Detail

Summary

• ID
  rs4135812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102490831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGC ATCTTGTCTG ACATAAAATT
  Y
  CTTCACATTG CTTATTTACC AGTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5106575	WI_WGS_2_103482844	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs4135812					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102490831 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	731 bp distal
Gm57687	predicted gene, 57687	within coordinates
Rr561713	regulatory region 561713	1817 bp distal
Rr561714	regulatory region 561714	1674 bp distal
Rr561715	regulatory region 561715	1195 bp distal
Rr561716	regulatory region 561716	410 bp distal
Rr561717	regulatory region 561717	1811 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19100	transcription start site region 19100	1906 bp downstream
Tssr19101	transcription start site region 19101	1817 bp downstream
Tssr19102	transcription start site region 19102	1791 bp downstream
Tssr19103	transcription start site region 19103	1744 bp downstream
Tssr19104	transcription start site region 19104	1722 bp downstream
Tssr19105	transcription start site region 19105	1652 bp downstream
Tssr19106	transcription start site region 19106	1634 bp downstream
Tssr19107	transcription start site region 19107	1614 bp downstream
Tssr19108	transcription start site region 19108	1578 bp downstream
Tssr19109	transcription start site region 19109	1536 bp downstream
Tssr19110	transcription start site region 19110	1254 bp downstream