rs4135935 SNP Detail

Summary

• ID
  rs4135935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130267912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT ACATTTGTTT AGTCATGATT
  Y
  CTCTTAGACA CATGTACAAT ATGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss5106698	WI_WGS_2_131422420	WI	MOUSE	f	SNP	C					T
ss37471747	NES08982568	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C		C	T	C	C		C	C	C	C
ss45381474	mCV22655516	ABI	CRAMUS_MOUSE	f	SNP	C	T				T		T
ss147596167	ENSMUSSNP3129391	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss320507193	CHEV_2_130251728	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs4135935					SNP	C	T	C	C	C	T	C	T	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37471747	NES08982568	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130267912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12264	CpG island 12264	1067 bp distal
Pced1a	PC-esterase domain containing 1A	1220 bp upstream
Rr565055	regulatory region 565055	1863 bp distal
Rr565056	regulatory region 565056	1617 bp distal
Rr565057	regulatory region 565057	815 bp distal
Tssr20210	transcription start site region 20210	1599 bp downstream
Tssr26295	transcription start site region 26295	1699 bp upstream
Tssr26296	transcription start site region 26296	1686 bp upstream
Tssr26297	transcription start site region 26297	1264 bp upstream
Tssr26298	transcription start site region 26298	1202 bp upstream
Vps16	VSP16 CORVET/HOPS core subunit	within coordinates