rs4135978 SNP Detail

Summary

• ID
  rs4135978
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:3400538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG AAGGACCTGC ACCTCAGGAG
  S
  ACCTTCCAGC TGCCCGAGAT CTCTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J
ss5106741	WI_WGS_6_3093227	WI	MOUSE	f	SNP		G	C
ss132926268	ENSMUSSNP6557238	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J
rs4135978					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:3400538 () rs orientation: forward

Symbol	Name	Function Class
Rr134883	regulatory region 134883	538 bp distal
Rr146113	regulatory region 146113	937 bp distal
Rr146114	regulatory region 146114	538 bp distal
Rr399551	regulatory region 399551	844 bp downstream
Samd9l	sterile alpha motif domain containing 9-like	1080 bp upstream
Tssr59689	transcription start site region 59689	1223 bp upstream
Tssr59690	transcription start site region 59690	1074 bp upstream
Tssr59691	transcription start site region 59691	964 bp upstream