rs4136264 SNP Detail

Summary

• ID
  rs4136264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:39837306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CATGTACTGT GACATGCACA CATATGCATA TATTTTAAAA
  GTAGGAGCTG GGCGTGGTAG TGCACACCTT TAATCCCAGC ACTCGGGAGG CAGAGGCAGG
  Y
  GGATTTCTGA GTTCGAGGCC AGCCTGGTCT ACAAAGTGAG CTCCAGGACA GCCAGGGCTA
  TACAGAGAAA CCCTGTCTCG AAAAAACCAA AAAAAAAAAA A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5107027	WI_WGS_9_46473412	WI	MOUSE	f	SNP	C			T
ss136424864	ENSMUSSNP5490175	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4136264					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:39837306 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1451	CpG island 1451	907 bp distal
Mfsd4b3-ps	major facilitator superfamily domain containing 4B3, pseudogene	1157 bp upstream
Mfsd4b5	major facilitator superfamily domain containing 4B5	Intron
Rr401837	regulatory region 401837	839 bp downstream
Rr430096	regulatory region 430096	1137 bp distal
Rr430097	regulatory region 430097	1307 bp distal
Rr430098	regulatory region 430098	1150 bp distal
Rr430099	regulatory region 430099	636 bp distal
Tssr97348	transcription start site region 97348	1148 bp upstream
Tssr97349	transcription start site region 97349	1123 bp upstream
Tssr97350	transcription start site region 97350	1077 bp upstream
Tssr97351	transcription start site region 97351	1027 bp upstream