rs4136521 SNP Detail

Summary

• ID
  rs4136521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57171863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCC AGGCAACTGT GAACTTCTCC
  Y
  GAAGTCTCTG GCCCTGGCCT TTCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss5107285	WI_WGS_9_57793586	WI	MOUSE	f	SNP			C	T
ss136517957	ENSMUSSNP5731687	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322971869	CHEV_9_57112387	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs4136521					SNP	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57171863 () rs orientation: forward

Symbol	Name	Function Class
1700017B05Rik	RIKEN cDNA 1700017B05 gene	1968 bp upstream
Cpgi21813	CpG island 21813	1678 bp distal
Gm68485	predicted gene, 68485	684 bp downstream
Gm68491	predicted gene, 68491	within coordinates
Rr679624	regulatory region 679624	1478 bp distal
Rr679625	regulatory region 679625	564 bp proximal
Tssr89770	transcription start site region 89770	2000 bp upstream
Tssr89771	transcription start site region 89771	1971 bp upstream
Tssr89772	transcription start site region 89772	1783 bp upstream
Tssr89773	transcription start site region 89773	1209 bp downstream
Tssr89774	transcription start site region 89774	1227 bp downstream