rs4136625 SNP Detail

Summary

• ID
  rs4136625
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:74209765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAG CCTTCGCTCT TTTTAGGACC
  W
  CTAAAAGAGA ATTAGGAAAA GCAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5107390	WI_WGS_16_74930928	WI	MOUSE	f	SNP	A		T
ss6366985	mCV23010422_71646293	CRAMUS	CRAMUS_MOUSE	f	SNP		A	T	A
ss39435588	mCV23010422	ABI	CRAMUS_MOUSE	f	SNP		A	T	A
ss148354328	ENSMUSSNP1600077	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss325248763	CHEV_16_74413122	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4136625					SNP	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:74209765 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8368	CpG island 8368	652 bp distal
Robo2	roundabout guidance receptor 2	within coordinates
Rr319102	regulatory region 319102	436 bp proximal
Rr325467	regulatory region 325467	within coordinates
Tssr141737	transcription start site region 141737	1447 bp upstream
Tssr141738	transcription start site region 141738	1426 bp upstream
Tssr141739	transcription start site region 141739	1334 bp upstream
Tssr141740	transcription start site region 141740	1249 bp upstream
Tssr141741	transcription start site region 141741	1146 bp upstream
Tssr141742	transcription start site region 141742	1085 bp upstream
Tssr141743	transcription start site region 141743	1071 bp upstream
Tssr141744	transcription start site region 141744	1045 bp upstream
Tssr141745	transcription start site region 141745	997 bp upstream
Tssr141746	transcription start site region 141746	746 bp upstream