rs4137319 SNP Detail

Summary

• ID
  rs4137319
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:39252462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTTGGT TGACATGACT
  CAATAATTTT ATTTGAGAAC CGAATGGGAT TGTATAGGTC TTTCTGAAGT TTCATGTTTA
  CGAATGAATG AACTGAGCTA TGTGCTTAAC CACAGAAGAT CAGGCAAACT AAGGTGTCCT
  GACTTCTAGA ATGGGGCTTT GTTCCCCTCG AACTGTCAAC TCATGATTGC GGTGCAGAAT
  W
  GCCTATTAGG TATTGCCACA TTCCTGTAAC TGCTGGGCTG GTGTGGGCAT AGTTACAAGT
  AACATTTACA TAATACCTGA TACAGAAACC TCAGTGTCTC AGAATAACTA TTTAACGATG
  ATGCCTTTTG CTCTATTCAG ACCAGTGAAA TGAGCACACA TTTCTGGCTC CATTTAATAA
  ATTACCTCCT TGAGGGCATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5108086	WI_WGS_13_38489026	WI	MOUSE	f	SNP	A						T
ss49101727	NES12439474	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T		T	T	T		T	T	A	A		A
ss324322194	CHEV_13_39160355	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4137319					SNP	A	T	T	T	T	T	T	T	T	T	T	T	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49101727	NES12439474	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:39252462 () rs orientation: forward

Symbol	Name	Function Class
Gm60523	predicted gene, 60523	658 bp upstream
Rr388296	regulatory region 388296	827 bp upstream