rs4137627 SNP Detail

Summary

• ID
  rs4137627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:56677585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAGGAAGC CAAAACTAAT GAAAATGGTA
  GTCCTGGGTA CTGAGTAAGG TACATGGGGC AGAAGGGAGA ACCTGATTAA TGAACTTTTT
  AATTTTTAAT TCATACTCTA TATTTTTTCA TGATTTCCTT TCCCCACCTT TTTTTTCTTA
  Y
  TTTACAGAGT TTTTCTTTGG AAacacacac acacacacac acacacacac acacatacaA
  AATGATTTAT GTTTAAGATA AGTAAATTAA AAGGATAAtc tctaaacgca aaacttagct
  gtttttttct tcaacaaaat ctcaattgat                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5108395	WI_WGS_1_57192947	WI	MOUSE	f	SNP				T			C
ss51254034	NES14273716	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	C		C	C	C	C		T	T	C	T		C
ss319732778	CHEV_1_56695270	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4137627					SNP	C	C	T	T	C	C	C	C	C	C	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51254034	NES14273716	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:56677585 () rs orientation: forward

Symbol	Name	Function Class
Gm70103	predicted gene, 70103	within coordinates
Hsfy2	heat shock transcription factor, Y-linked 2	991 bp upstream
Tssr11733	transcription start site region 11733	1011 bp upstream
Tssr11734	transcription start site region 11734	997 bp upstream
Tssr11735	transcription start site region 11735	977 bp upstream
Tssr11736	transcription start site region 11736	966 bp upstream
Tssr11737	transcription start site region 11737	946 bp upstream