rs4138064 SNP Detail

Summary

• ID
  rs4138064
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51260782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTC CAAGACTTTT CCATCTCTCC
  Y
  TCCCTTCCTT CTGAGACAGG GTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
ss5108835	WI_WGS_3_51787692	WI	MOUSE	f	SNP	T	C
ss320762370	CHEV_3_51157283	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
rs4138064					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51260782 () rs orientation: forward

Symbol	Name	Function Class
Rr576282	regulatory region 576282	10 bp proximal
Rr576283	regulatory region 576283	192 bp proximal
Rr576284	regulatory region 576284	851 bp proximal
Rr576285	regulatory region 576285	1903 bp proximal