rs4138319 SNP Detail

Summary

• ID
  rs4138319
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:127386816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG CACACTGTCC CCTGTACCTG
  K
  TATGCACAGA GACTTGCATT TTGTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5109090	WI_WGS_1_128250804	WI	MOUSE	f	SNP	T			G
ss145443526	ENSMUSSNP1563532	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4138319					SNP	T	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127386816 () rs orientation: forward

Symbol	Name	Function Class
Gm41947	predicted gene, 41947	within coordinates
Mgat5	mannoside acetylglucosaminyltransferase 5	within coordinates
Rr11973	regulatory region 11973	within coordinates
Rr19047	regulatory region 19047	1816 bp distal
Rr30263	regulatory region 30263	within coordinates
Rr35624	regulatory region 35624	1923 bp proximal
Rr396245	regulatory region 396245	within coordinates