rs4138537 SNP Detail

Summary

• ID
  rs4138537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:56677639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGGCAGAA GGGAGAACCT GATTAATGAA
  CTTTTTAATT TTTAATTCAT ACTCTATATT TTTTCATGAT TTCCTTTCCC CACCTTTTTT
  TTCTTACTTT ACAGAGTTTT TCTTTGGAAa cacacacaca cacacacaca cacacacaca
  Y
  atacaAAATG ATTTATGTTT AAGATAAGTA AATTAAAAGG ATAAtctcta aacgcaaaac
  ttagctgttt ttttcttcaa caaaatctca attgattgac ttttgccaat gaatagttgg
  aaactggggt aaatagttgg aaactcagag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	LG/J	SM/J
ss5109309	WI_WGS_1_57193001	WI	MOUSE	f	SNP	T	C
ss319732779	CHEV_1_56695324	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	LG/J	SM/J
rs4138537					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:56677639 () rs orientation: forward

Symbol	Name	Function Class
Gm70103	predicted gene, 70103	within coordinates
Hsfy2	heat shock transcription factor, Y-linked 2	1045 bp upstream
Tssr11733	transcription start site region 11733	1065 bp upstream
Tssr11734	transcription start site region 11734	1051 bp upstream
Tssr11735	transcription start site region 11735	1031 bp upstream
Tssr11736	transcription start site region 11736	1020 bp upstream
Tssr11737	transcription start site region 11737	1000 bp upstream