rs4138709 SNP Detail

Summary

• ID
  rs4138709
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  109
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:31242583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAATACCCA GAAGCTGCCT TCCTCGTTCC TTGAAATACC
  TAACCTGGGT AATatagata gatagataga tagatagata gatagataga tagatagata
  K
  anagagatgt agataTAGAT AATATATATN AAATATGAAA GATCTCAGAT TGCTTTCAGG
  ATAGTGGCAA GACTGAGGGT GTGAAGCAGA GGTACTTGGC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5109483	WI_WGS_16_31208039	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs4138709					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31242583 () rs orientation: forward

Symbol	Name	Function Class
Bdh1	3-hydroxybutyrate dehydrogenase, type 1	Intron
Rr514474	regulatory region 514474	1475 bp distal
Rr514475	regulatory region 514475	1365 bp distal
Rr514476	regulatory region 514476	662 bp proximal
Rr514477	regulatory region 514477	1498 bp proximal
Rr514478	regulatory region 514478	1923 bp proximal
Tssr137893	transcription start site region 137893	1487 bp downstream
Tssr137894	transcription start site region 137894	1457 bp downstream
Tssr137895	transcription start site region 137895	1418 bp downstream