rs4138916 SNP Detail

Summary

• ID
  rs4138916
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34726808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTGTTAC CTCTTCAGGA
  TACACACACA CACACACACA CACACACACA CACACACGCA CACATATAAT ATGATATGTA
  TATGTGTGTG TGTGTGTGTG TGTGTTTAAT ACTTTTGTCA GGCAAGTAGA ATATTTCTCT
  TTAGATGCTT TTGATTTCCA CCCTGAACAG AGTTTTTTGA GCAAATTTTT CCCCTTTCTT
  W
  AAAGGCTTAA AAGGATTATA GATAGGAGGA GGAGGAGGGG AGAGGAGGAG AAAAAGAGGA
  AGACAGGGAA GAGGAGAAAG AAATGGCTTG CAGTGTTTTG TTTACTTGAT TGCTGTTAAG
  TCCTTAGGAA TAGCTGAGAC ACTGAAGACA TTGAGCTGGG TGAGGCACTT GACCTGTTTC
  TTGCAGATGC CGCTGGTCGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss5109691	WI_WGS_8_33180145	WI	MOUSE	f	SNP	T		A
ss149099943	ENSMUSSNP1022403	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs4138916					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34726808 () rs orientation: forward

Symbol	Name	Function Class
Gm63978	predicted gene, 63978	within coordinates
Gm63981	predicted gene, 63981	84 bp downstream
Tssr80908	transcription start site region 80908	874 bp downstream